You may be able to get rid of the drone with a high flow, catted xpipe.
Another way to alleviate drone is to change your rear gears. This will get you out of the RPM range where the drone is.
On my Saleen S331, it drones from the factory so badly that you can barely carry on a conversation in the cab between 1700-2000rpm...or 55-60 MPH. You know, the MPH most people drive. Many of us installed a 4.56 gear....it gets us out of the "drone zone" rather quickly. I would think on the mustang, a 3.73 gear would do the trick.
Dont feel bad, my magnaflow kit rattles AND drones. When It does drone, I just put it in another gear (its an auto).