Guess what?
If you have a 3G alternator, the white/ yellow wire is critical to proper operation. It is the voltage sense and regulator power lead that picks up the difference in voltage at the alternator output stud and the connection point at the starter solenoid. If you cheat and run it directly to the alternator output, it sees the voltage at the alternator output stud. It does not see the voltage at the starter solenoid connection point where it feeds power to everything else. You may have a voltage drop in the wiring between the alternator output stud and the connection to the starter solenoid. Thus you may have low voltage or less than the standard regulated voltage at the starter solenoid connection point. This makes for low voltage throughout the rest of the car: everything operates at less than full efficiency.
A 1 volt drop at full load is a pretty serious drop in a 14 volt system. 13.35/14.44 = 7.55% voltage loss.
If you did run the white/yellow wire to the starter solenoid, then you definitely have a problem. Here's how to find it using a voltmeter to check for voltage drops.
Voltage drop testing of connections and grounds.
Use a Digital Volt Meter (DVM) to measure the voltage drop across a connection or wire. Adding length to the test leads may be required, and does not affect the accuracy of the test. Use 18-20 gauge wire for the test leads if you have to lengthen them.
Voltage drop testing must be done while the usual load is on the circuit. If it is a starter, it has to be tested while cranking the starter. If it is lights, A/C or fan, they must be turned on high while testing. Fail to do this and you will not get accurate results
1.) Most grounds use the negative battery post as their starting point. Keep this in mind when checking grounds.
2.) The voltage will be small if the ground is good: less voltage drop = better connection.
3.) Be sure that the power to the circuit is on, and the circuit is being used in its normal manner. For instance, if it is a light circuit, the lights on that circuit should be powered on.
4.) To measure grounds, place one DVM lead on the battery negative post and the other on the wire or connector that goes to ground.
5.) Voltage drops should not exceed the following:
200 mV Wire or cable
300 mV Switch
100 mV Ground
0 mV to <50 mV Sensor Connections (sensors are low voltage devices and small drops can have a large effect on the devices dependent on sensor accuracy)
0.0V Connections
A voltage drop lower that spec is always acceptable.
6.)
See http://assets.fluke.com/appnotes/automotive/beatbook.pdf for help for help troubleshooting voltage drops across connections and components. . I recommend that you save the PDF doc for future reference.