I completely agree, my TwEECer made my AFPR rather useless. One thing that AFPR's can be useful for, though, is daignosing rich/lean problems. You can jack the pressure up or down 10psi and it will take time for the EEC to compensate, thus you can see if your problem is fuel related. For tuning, though, the EEC will adjust pulsewidth over time to compensate for the changing fuel pressure.
My 255lph
BBK intak pump, non high pressure, was unable to keep up with my 150 dry shot. I had to richen the mixture up really really fat through pulsewidth to get it to the proper A/F ratio. I'm bringing this up showing how much of an effect that pulsewidth has as opposed to fuel pressure.