OK, lets see if I understand what you're saying ... You have three batteries (presumably stored) and two of them have red showing in the little "your battery is good/bad" indicator. They should show green if they are good but if I were you, I'd take them to autozone (or another place that will load test them for free) and get them tested.
You can buy a little cheap ass syringe looking deal that has four different colored balls in it ... suck up a little of the water from the battery cells and the package tells you how to read the floating balls (from any auto parts store ... couple bucks) ...
The voltage, if you are reading it with a voltmeter, is not a good way to tell (unless it's reading 10 volts or something real low). Hope that helps some .. FWIW, if you've got chargers on em' all the time, I don't really see why they would be bad. Maybe they just need to be moved around a little to get the "ball rolling" or whatever.