I was just in the same boat. I put milled GT40s on my stock H.O block, and was OK on P-to-V clearance, however the stock springs are/were in question and I wasn't going to gamble, so I ponied up and bought the TF kit. I wouldn't suggest using Ford keepers on the TF springs, but that is just me. They are very similar to the stock GT40 keepers, but they are 1 piece instead of the 2 piece design that is seen on the stock GT40 valvetrain. Other than that, the TF springs needed different shims to achieve the same install height, and overall the TF has more strength, and you can tell when installing them. Hope these pictures help.
Locks: Left, Trick Flow, Right, Supplied in GT40 rebuilt kit
Springs: Left, Trick Flow, Right, Stock GT40
Installed: Left, Stock GT40, Right, Trick Flow