can someone tell me where these go?

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actually, the fuel pressure regulator gets direct vacuum straight from the intake. That is more than like the egr line/maybe the a/c line. The egr line feeds off of the lower solonoids on the pass side fender rail, and vacuum goes into it from the intake. Just make sure your egr is hooked up. If it is, don't worry about those, just make sure they're not leaking vacuum.
 
Looks like you only have two of them there;

Normally one goes to the back of the upper intake, one goes to the EGR, and one goes to the smog pump valve. The Fuel Pressure Regulator gets its vacuum from a little short line that connects between the FPR and upper intake (as mentioned above).

Any of the holes not used above, be sure and plug them w/ something.