Procharger install questions

Ok I am finishing up putting on a D1-SC procharger on my 95 cobra. The head unit on the car is mounted up and it is only about a 1/4 of an inch from my frame in the engine compartment. Is it supposed to be that way or should it be further away. Also the piping I have on the drivers side isn't quite lining up. I got it to fit but some of my rubber hosing on it isn't as smooth as it should be. I also can't get the filter adapter to fit on the back of the procharger to install the filter. There just isn't enough room. Any ideas or help would be appreciated. Pics would also be great.
 
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