Hey guys, here's an update on the situation...
After getting home from putting the stock H-pipe back on I took the car out again. It finally seemed to smooth out, but then the CEL came on. I still don't think it is firing quite right, but at least it isn't having the pronounced hesitations that it was having. Now it's like it just isn't getting a good clean firing. I do have to say that the low end torque seems stronger tho. 2nd and 3rd are pulling nicely between 2k and 4k.
So this morning I went by Autozone and had them read the CEL codes. It was showing the following codes... P1443 Auxillary Emission Control, P0141 Sensor Heater Circuit Malfunction Bank 1, and P0402 EGR Flow Excessive. Then I had them erase the codes, went about 2 miles and got some gas, and then went about another mile and the CEL came back on. Since I was on my way to work I haven't had the codes read again yet, but will do shortly to see if they are the same or not.
Anyone got any ideas as to what could be causing these codes?! Any danger in damaging anything by continuing to drive with it like this?!
Also, as a side note... Any recommendations on an after market H-pipe with hi-flow cats?
Thanks for the help,
Jay