Interesting stuff. What I've learned:
1) Droning is the resonant frequency of the muffler or debatably the muffler and system.
2) The car/panels can act as an amplifier (Jester/Bottlefed, I think you got something here)
3) I’ve got the only Dynomax super turbos that drone (joking)
So if it's as simple as making one side shorter than the other, I would think this would be standard practice when building a system from scratch. It does make sense though. I'm surprised they didn't use two different sized mufflers on the 80's mustangs. When I get a chance I'm going to plug one tailpipe, forcing one exhaust bank through the H pipe and see what happens at 2,000 rpms. There should be no drone.
I was thinking "why not tack steel plates to the mufflers, adding mass and raising the resonant frequency of the mufflers?". Then I was seeing a bunch of Dynomat in my future for the floorboards, etc. I got to thinking "what would happen if you wrapped the mufflers with Dynomat (or equivalent). Or just one muffler? I don't think my mufflers get over 300*F. That MIGHT raise the droning RPM out of my cruise RPMS's.
Other ideas would be a 2 1/4 muffler on one side and a 2 1/2 on the other. I wish I had the time, money, and resources to play with this. I bet you could come up with some interesting combinations. Especially if I could get an X pipe under there.