That's not necessarily a bad thing at all. It kind of depends on what was cut out and how things were welded back together. Any idea what gauge steel he used? The two biggest worries you might have are the brackets for the rear bolts on the front seat and the thickness of the metal.
Even matching the floorpans gauge isn't always the best. Here's a picture of my driver's side rear, notice the cracks in the floorboard.
This wasn't caused by excessive acceleration from the PO (it's a V6), more like excessive double quarter pounders with cheese and large fries. I would recommend an extra plate in that area, if you already are replacing the pans. Just in case of an overly large in-law drops their full weight on your poor mustang. Take a look at these from LMR, I'll be putting them on both sides of my blue car.
https://lmr.com/item/LRS-11135RP/79-93-Mustang-Floor-Pan-Reinforcement-Panel
Can you post a picture?