Here's my updated list. Feel free to pick it apart, but I think this is a 95% solution.
Engine
Ford Racing Z2363 engine (rear sump): $10,499.99
Trick Flow R-Series intake w/90mm opening (silver): $729.99
Trick Flow 3/8 intake spacer: $72.99 (TFS-51520009)
Accufab 90mm throttle body: $289.99
Accufab 2” wide 90mm throttle body spacer: $94.99
Ford Racing valve covers: $189.99 (#M6000J302R)
44 pound fuel injectors: $524.99
BBK long tube headers: $569.99 (#BBK-15940) and X-pipe: $499.99 (#BBK-1659)
Anderson Power Pipe: $276.59 (#AF-0112A-90)
Anderson filter and coupler for ’03-’04 Cobra MAF: $72.95 (#KITLMF)
JMS MAF extension harness
and Pro-M 4 to 6 pin adapter: $49 (jms-8695-ext)
and $45 (PMR9304) already have the adapter
Coolant temp sensor: $19.99 (#LRS-12648A)
Air Charge Temperature (ACT) sensor: $19.99 (#LRS-12697A)
Temperature gauge sending unit: $14.99 (#LRS-TS58)
Oil pressure sending unit: $30.99 LMR (#LRS-PS243)
Transmission
D&D Transmission Fox Body T-56 transmission kit w/2.97 first gear: $4,995.00
Ask them about my application and whether they suggest the 2.66 or 2.97 first gear trans
Will also need a new clutch. Get a single disc clutch.
I can utilize the existing 157 tooth steel flywheel
Shifter: MGW shifter for a T-56
Suggested additional items:
Relocated throttle bracket
https://mc-machine.com/ols/products/50-throttle-cable-bracket
PA Performance mini-PMGR starter (#1806): $149.00